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The stereotactic normalization result is shown on the NORMALIZED page.
Please verify that the normalization procedure was successful by evaluating the alignment in different parts of the brain. Particularly helpful are the iso-contour lines. The thresholds on the TEMPLATE and the NORMALIZED panel should be adjusted so that the lines follow the same structures. The final brain structure outlines will only be adequate if the normalization succeeded.
For the atlases with population tissue probability maps the white matter tissue probability map can be used to allow the intersection of the population white matter region with the selected atlas. This can be easily achieved enabling the White matter parcellation box.
To start the mapping of the atlas brain structures to the patient space please activate the Segment Brain action button.