Index
Symbols & Numeric
A
B
C
D
E
F
G
H I J K
L
M
N
O
P
Q
R
S
T
U
V
W
X Y
Z
Symbols & Numeric
1. Empty Brain Norm Creation
2. Control Samples Addition
3. Normalization Definition and Sample Normalization
3D Rendering of Brain VOIs
4. Calculation of Normal Pattern
5. Variance Definition for z-Score Calculation
6. Comparison Settings
7. Result Mask Specification
7. Result Mask Specification
Batch Mode Compare to Norm
8. Brain Norm Saving
A
AAL Single-Subject Atlas
AAL-Merged Atlas
AAL-VOIs Atlas
Amyloid Cortical Composite
Anatomical PET Image Loading and PET-PET Matching
Application Notes
Atlas Methodology
Atlas Selection
B
Batch Mode
Batch Mode Compare to Norm
Batch Mode Maximum Probability Atlas & Brain Parcellation (Brain VOIs)
Brain Norm Creation
Brain Norm Creation
PET-based Normalization
Brain Norm Editor
Brain Norm Functionality
Brain Parcellation
Brain Parcellation Implementation in PNEURO
Brain Segments Calculation
Brain Segments Calculation
Brain Segments Calculation
Brain Segments Calculation
Brain Segments Calculation
Brain Spill-out (Muller-Gartner)
Brain Spill-out (Muller-Gartner)
Brain VOI Editing and Statistics Calculation
Brain Structures
Brain VOI Editing and Statistics Calculation
Brain VOI Editing and Statistics Calculation
Brain VOI Editing and Statistics Calculation
Brain VOI Editing and Statistics Calculation
Brain VOI Editing and Statistics Calculation
Brain VOI Editing and Statistics Calculation
Brain VOI Editing and Statistics Calculation
Brain VOI Tools: Common Features
Brain VOIs Based on Maximum Probability Atlas
Brain VOIs Based on T1-MRI Segmentation
C
Compare to Norm Patient Data Analysis
Cynomolgus Monkey Atlas
E
Example Database
F
Functional PET Image Loading and Time Averaging
Functional PET Image Loading and Time Averaging
PET Image Loading and Time Averaging
G
Grey Matter Spill-out and White Matter Spill-in (Muller-Gartner)
Brain VOI Editing and Statistics Calculation
Grey Matter Spill-out and White Matter Spill-in (Muller-Gartner)
L
Landmark Definition and MR Segmentation
Landmark Definition and Parcellation
LMA Variant of GTM Method
Brain VOI Editing and Statistics Calculation
LMA Variant of GTM Method
M
Maximum Probability Atlas Implementation in PNEURO
Methodology
Mouse Brain Atlas (Ma-Benveniste-Mirrione)
MR Image Loading and Denoising
MR Image Loading and Segmentation
MR Image Loading and Segmentation
MR Image Loading and Segmentation
MR Image Loading and Segmentation
MR Loading Configuration
MR-based Normalization
MR-based Normalization
MR-based Normalization
N
N30R83 Brain Structures
N30R83 Maximum Probability Atlas
O
Outlining of Brain Structures
Outlining of Brain Structures
Outlining of Brain Structures
Outlining of Brain Structures
Outlining of Brain Structures
Outlining of Brain Structures
Outlining of Brain Structures
P
Parametric Mapping
Parcellation Result and Matching with PET
Parcellation Result and Outlining of Brain Structures
Partial-Volume Correction (PVC)
Brain VOI Editing and Statistics Calculation
Partial-Volume Correction (PVC)
PET Image Loading
PET Image Loading and Time Averaging
PET Image Loading and Time Averaging
PET Image Loading and Time Averaging
PET Image Loading and Time Averaging
PET to MR Matching
PET-based Normalization
PET-based Normalization
PET-based Normalization
PMOD Copyright Notice
PMOD Neuro Tool Introduction (PNEURO)
Protocols
Q
Quality Control Capture
Quality Control of Normalization
R
Recommendations for Brain VOI Calculations
References
Region-based Voxel-wise (RBV)
Brain VOI Editing and Statistics Calculation
Region-based Voxel-wise (RBV)
Run All
S
Saving Intermediate Results
Sharing Databases
Sprague-Dawley Rat Brain Atlas (Schiffer)
Statistics of Dynamic PET Data
Statistics of Static Data
Statistics Results
Structure of VOI Atlases in PMOD
T
Template-based Normalization
Tree Organization of Atlas VOIs
Brain VOI Editing and Statistics Calculation
Parcellation Result and Outlining of Brain Structures
Tree Organization of Atlas VOIs
U
User Interface
Brain VOI Editing and Statistics Calculation
Parcellation Result and Outlining of Brain Structures
User Interface
V
VOI Analysis
VOI Based Partial-Volume Correction (GTM Method)
Brain VOI Editing and Statistics Calculation
Region-based Voxel-wise (RBV)
VOI Based Partial-Volume Correction (GTM Method)
W
Wistar Rat Brain Atlas (Tohoku)
Workflow for Functional and Anatomical PET
Workflow for MR-only Studies
Workflow for MR-only Studies
Workflow for MR-only Studies
Workflow for PET-only Studies
Workflow for Studies with PET and MR
Workflow for Studies with PET and MRI
Maximum Probability Atlas Implementation in PNEURO
Workflow for Studies with PET and MRI
Z
Z-Score Analysis